A List of Model Repositories SBML models for KEGG SBML model repository Metabolic Syndrome EGFR Pathway Map Macrophage Map Graphical Notation Samples Toll-Like Receptor signaling network

SBML models for KEGG All SBML files in this directory were converted from KEGG (Kyoto Encyclopedia on Genes and Genomes) by using our conversion script kegg2sbml with the permission of Professor Minoru Kanehisa (Kyoto University). The conversion was performed by Akiya Jouraku, Akira Funahashi and Hiroaki Kitano, as part of the JST ERATO-SORST Kitano Symbiotic Systems Project. Publication of papers and other documents based on this database must include proper acknowledgment of this fact. SBML models for KEGG Metabolic Pathways(Released 2004.6.16) Source Databases: * KEGG Metabolic Pathways Release 30 * KGML v0.4 files for KEGG Metabolic Pathways * LIGAND Release 29 Downloadable tarballs: * SBML files without CellDesigner's tag : [Level-1 Ver-2|Level-2 Ver-1] * SBML files with CellDesigner's tag : [Level-1 Ver-2|Level-2 Ver-1] Species-specific metabolic pathways: Aquifex aeolicus Archaeoglobus fulgidus Anabaena sp. Aeropyrum pernix Agrobacterium tumefaciens C58 Cereon Arabidopsis thaliana Agrobacterium tumefaciens C58 UWash Buchnera aphidicola Bp Bacillus anthracis Buchnera aphidicola Sg Bdellovibrio bacteriovorus Bordetella bronchiseptica Borrelia burgdorferi Bacillus cereus ATCC 10987 Bacillus cereus Blochmannia floridanus Bacillus halodurans Bradyrhizobium japonicum Bifidobacterium longum Brucella melitensis Brucella suis Bordetella parapertussis Bordetella pertussis Bacillus subtilis Bacteroides thetaiotaomicron Buchnera sp. Clostridium acetobutylicum Coxiella burnetii Chlamydophila caviae Caulobacter crescentus Corynebacterium diphtheriae Corynebacterium efficiens Caenorhabditis elegans Corynebacterium glutamicum Campylobacter jejuni Chlamydia muridarum Chlamydophila pneumoniae AR39 Clostridium perfringens Chlamydophila pneumoniae J138 Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae TW183 Clostridium tetani E88 Chlorobium tepidum Chlamydia trachomatis Chromobacterium violaceum Drosophila melanogaster Deinococcus radiodurans Escherichia coli CFT073 Escherichia coli O157 EDL933 Escherichia coli K-12 W3110 Escherichia coli K-12 MG1655 Escherichia coli O157 Sakai Encephalitozoon cuniculi Enterococcus faecalis Fusobacterium nucleatum Geobacter sulfurreducens Gloeobacter violaceus Halobacterium sp. Haemophilus ducreyi Helicobacter hepaticus Haemophilus influenzae Helicobacter pylori J99 Helicobacter pylori 26695 Homo sapiens Leptospira interrogans Listeria innocua Lactobacillus johnsonii Lactococcus lactis Listeria monocytogenes Lactobacillus plantarum Methanosarcina acetivorans Mycobacterium bovis Mycoplasma gallisepticum Mycoplasma genitalium Homo sapiens (Disease) Methanococcus jannaschii Methanopyrus kandleri Mycobacterium leprae Mesorhizobium loti Methanosarcina mazei Methanococcus maripaludis Mus musculus Mycoplasma mycoides Mycobacterium avium paratuberculosis Mycoplasma penetrans Mycoplasma pneumoniae Mycoplasma pulmonis Mycobacterium tuberculosis CDC1551 Methanobacterium thermoautotrophicum Mycobacterium tuberculosis H37Rv Nanoarchaeum equitans Nitrosomonas europaea Neisseria meningitidis serogroup A Neisseria meningitidis serogroup B Oceanobacillus iheyensis Pyrococcus abyssi Pseudomonas aeruginosa Pyrobaculum aerophilum Plasmodium falciparum Pyrococcus furiosus Porphyromonas gingivalis Pyrococcus horikoshii Photorhabdus luminescens Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Pasteurella multocida Phytoplasma sp. onion yellows Pseudomonas putida Pseudomonas syringae Rhodopirellula baltica Rickettsia conorii Rattus norvegicus Rhodopseudomonas palustris CGA009 Rickettsia prowazekii Ralstonia solanacearum Streptococcus agalactiae Staphylococcus aureus MW2 Streptococcus agalactiae NEM316 Staphylococcus aureus N315 Staphylococcus aureus Mu50 Saccharomyces cerevisiae Streptomyces coelicolor Staphylococcus epidermidis ATCC 12228 Shigella flexneri Shigella flexneri 2457T Streptomyces avermitilis Sinorhizobium meliloti Streptococcus mutans Shewanella oneidensis Streptococcus pyogenes M3 Streptococcus pyogenes M18 Streptococcus pneumoniae TIGR4 Schizosaccharomyces pombe Streptococcus pneumoniae R6 Streptococcus pyogenes SSI1 Streptococcus pyogenes Sulfolobus solfataricus Salmonella typhimurium Sulfolobus tokodaii Salmonella typhi Ty2 Salmonella typhi Synechococcus sp. PCC6301 Synechocystis sp. Synechococcus sp. WH8102 Thermoplasma acidophilum Treponema denticola Thermosynechococcus elongatus Thermotoga maritima Treponema pallidum Thermoanaerobacter tengcongensis Thermus thermophilus Thermoplasma volcanium Tropheryma whipplei Tropheryma whipplei TW08/27 Ureaplasma urealyticum Vibrio cholerae Vibrio parahaemolyticus Vibrio vulnificus Vibrio vulnificus YJ016 Wigglesworthia brevipalpis Wolbachia wMel Wolinella succinogenes Xanthomonas axonopodis Xanthomonas campestris Xylella fastidiosa Xylella fastidiosa Temecula1 Yersinia pestis Yersinia pestis KIM Yersinia pestis Mediaevails

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