2.2 SQUARE inside PROTEIN p0 inside PROTEIN p1 inside PROTEIN p2 inside PROTEIN p3 inside PROTEIN p4 inside PROTEIN p5 inside PROTEIN p6 inside PROTEIN p7 inside PROTEIN p8 inside PROTEIN p9 inside PROTEIN p10 inside PROTEIN p11 inside PROTEIN p12 inside PROTEIN p13 inside PROTEIN p14 inside PROTEIN p15 inside PROTEIN p16 inside PROTEIN p17 inside PROTEIN p18 inside PROTEIN p19 inside PROTEIN p20 inside PROTEIN p21 inside PROTEIN p22 inside PROTEIN p23 inside PROTEIN p24 inside PROTEIN p25 inside PROTEIN p26 inside PROTEIN p27 inside PROTEIN p28 inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidopropionate inside SIMPLE_MOLECULE Carbamoyl_space_phosphate inside SIMPLE_MOLECULE _space_5_space_6_minus_Dihydrothymine inside SIMPLE_MOLECULE dTDP inside SIMPLE_MOLECULE _space_2_minus_Deoxy_minus_D_minus_ribose_space_1_minus_phosphate inside SIMPLE_MOLECULE dTTP inside SIMPLE_MOLECULE dCTP inside GENE DNA inside SIMPLE_MOLECULE dTMP inside SIMPLE_MOLECULE Thymine inside SIMPLE_MOLECULE _beta__minus_Alanine inside SIMPLE_MOLECULE Uridine inside SIMPLE_MOLECULE Pseudouridine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE Uracil inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE _space_5_space_6_minus_Dihydrouracil inside SIMPLE_MOLECULE _space_3_space__minus_UMP inside SIMPLE_MOLECULE Deoxycytidine inside SIMPLE_MOLECULE CMP inside SIMPLE_MOLECULE Cytosine inside SIMPLE_MOLECULE dUDP inside SIMPLE_MOLECULE dUTP inside RNA RNA inside SIMPLE_MOLECULE _space_S_space__minus_Dihydroorotate inside SIMPLE_MOLECULE Cytidine inside SIMPLE_MOLECULE UTP inside SIMPLE_MOLECULE L_minus_Glutamine inside SIMPLE_MOLECULE Thymidine inside SIMPLE_MOLECULE _space_2_space__space_3_space__minus_Cyclic_space_CMP inside SIMPLE_MOLECULE CDP inside SIMPLE_MOLECULE CTP inside SIMPLE_MOLECULE _space_2_space__space_3_space__minus_Cyclic_space_UMP inside SIMPLE_MOLECULE _space_3_minus_Aminoisobutanoate inside SIMPLE_MOLECULE _space_3_space__minus_CMP inside SIMPLE_MOLECULE dCDP inside SIMPLE_MOLECULE Orotate inside SIMPLE_MOLECULE Orotidine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE N_minus_Carbamoyl_minus_L_minus_aspartate inside SIMPLE_MOLECULE _space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidoisobutyrate inside SIMPLE_MOLECULE dUMP inside SIMPLE_MOLECULE UMP inside SIMPLE_MOLECULE dCMP inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Deoxyuridine inside SIMPLE_MOLECULE _space_5_minus_Methylcytosine STATE_TRANSITION dCTP dUTP c7 c22 STATE_TRANSITION RNA UDP c23 c49 STATE_TRANSITION dCDP dCTP c35 c7 STATE_TRANSITION _space_5_space_6_minus_Dihydrothymine _space_3_minus_Ureidoisobutyrate c3 c43 STATE_TRANSITION dTDP dTTP c4 c6 STATE_TRANSITION dTMP dTDP c9 c4 STATE_TRANSITION _space_3_minus_Ureidopropionate _beta__minus_Alanine c1 c11 STATE_TRANSITION dUMP dUDP c44 c21 STATE_TRANSITION CTP UTP c31 c26 STATE_TRANSITION Deoxyuridine dUMP c50 c44 STATE_TRANSITION Thymidine dTMP c28 c9 STATE_TRANSITION dTMP Thymidine c9 c28 STATE_TRANSITION Orotidine_space_5_space__minus_phosphate Orotate c37 c36 c39 STATE_TRANSITION UMP Uridine c45 c12 STATE_TRANSITION Orotidine_space_5_space__minus_phosphate UMP c37 c45 STATE_TRANSITION UMP Uracil c45 c14 STATE_TRANSITION CDP dCDP c30 c0 c35 c40 STATE_TRANSITION Cytidine Uridine c25 c12 STATE_TRANSITION CMP Cytidine c19 c25 STATE_TRANSITION CMP CDP c19 c30 STATE_TRANSITION UDP UTP c49 c26 STATE_TRANSITION RNA CDP c23 c30 STATE_TRANSITION _space_2_space__space_3_space__minus_Cyclic_space_CMP _space_3_space__minus_CMP c29 c34 STATE_TRANSITION UMP UDP c45 c49 STATE_TRANSITION CTP RNA c31 c23 STATE_TRANSITION UTP RNA c26 c23 STATE_TRANSITION dUDP dUTP c21 c22 STATE_TRANSITION CDP CTP c30 c31 STATE_TRANSITION UTP CTP c26 c31 STATE_TRANSITION dCTP DNA c7 c8 STATE_TRANSITION dTTP DNA c6 c8 STATE_TRANSITION Thymidine Thymine c28 c10 c5 STATE_TRANSITION L_minus_Glutamine Carbamoyl_space_phosphate c27 c2 STATE_TRANSITION _space_5_space_6_minus_Dihydrouracil _space_3_minus_Ureidopropionate c16 c1 STATE_TRANSITION dCMP Deoxycytidine c46 c18 STATE_TRANSITION Carbamoyl_space_phosphate N_minus_Carbamoyl_minus_L_minus_aspartate c2 c38 STATE_TRANSITION dCMP dCDP c46 c35 STATE_TRANSITION Uracil Deoxyuridine c14 c50 STATE_TRANSITION _space_2_space__space_3_space__minus_Cyclic_space_UMP _space_3_space__minus_UMP c32 c17 STATE_TRANSITION Deoxycytidine Deoxyuridine c18 c50 STATE_TRANSITION dUTP dUMP c22 c44 STATE_TRANSITION dUMP dTMP c44 c9 STATE_TRANSITION Cytosine Uracil c20 c14 STATE_TRANSITION _space_S_space__minus_Dihydroorotate Orotate c24 c36 STATE_TRANSITION Oxidized_space_thioredoxin Thioredoxin c42 c47 STATE_TRANSITION UDP dUDP c41 c15 c21 c48 STATE_TRANSITION _space_5_minus_Methylcytosine Thymine c51 c10 STATE_TRANSITION Uracil Pseudouridine_space_5_space__minus_phosphate c14 c13 STATE_TRANSITION _space_S_space__minus_Dihydroorotate N_minus_Carbamoyl_minus_L_minus_aspartate c24 c38 STATE_TRANSITION _space_3_minus_Ureidoisobutyrate _space_3_minus_Aminoisobutanoate c43 c33