2.2 SQUARE inside PROTEIN p0 inside PROTEIN p1 inside PROTEIN p2 inside PROTEIN p3 inside PROTEIN p4 inside PROTEIN p5 inside PROTEIN p6 inside PROTEIN p7 inside PROTEIN p8 inside PROTEIN p9 inside PROTEIN p10 inside PROTEIN p11 inside PROTEIN p12 inside PROTEIN p13 inside PROTEIN p14 inside PROTEIN p15 inside PROTEIN p16 inside PROTEIN p17 inside PROTEIN p18 inside PROTEIN p19 inside PROTEIN p20 inside PROTEIN p21 inside PROTEIN p22 inside PROTEIN p23 inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidopropionate inside SIMPLE_MOLECULE _space_5_space_6_minus_Dihydrothymine inside SIMPLE_MOLECULE dTDP inside SIMPLE_MOLECULE dTTP inside SIMPLE_MOLECULE dCTP inside GENE DNA inside SIMPLE_MOLECULE dTMP inside SIMPLE_MOLECULE Uridine inside SIMPLE_MOLECULE Pseudouridine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE Uracil inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE _space_5_space_6_minus_Dihydrouracil inside SIMPLE_MOLECULE Deoxycytidine inside SIMPLE_MOLECULE CMP inside SIMPLE_MOLECULE dUDP inside SIMPLE_MOLECULE dUTP inside RNA RNA inside SIMPLE_MOLECULE _space_S_space__minus_Dihydroorotate inside SIMPLE_MOLECULE P1_space_P4_minus_Bis_space_5_space__minus_uridyl_space__space_tetraphosphate inside SIMPLE_MOLECULE Cytidine inside SIMPLE_MOLECULE UTP inside SIMPLE_MOLECULE Thymidine inside SIMPLE_MOLECULE CDP inside SIMPLE_MOLECULE CTP inside SIMPLE_MOLECULE dCDP inside SIMPLE_MOLECULE Orotate inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidoisobutyrate inside SIMPLE_MOLECULE dUMP inside SIMPLE_MOLECULE UMP inside SIMPLE_MOLECULE dCMP inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Deoxyuridine STATE_TRANSITION RNA UDP c17 c36 STATE_TRANSITION dCDP dCTP c25 c5 STATE_TRANSITION _space_5_space_6_minus_Dihydrothymine _space_3_minus_Ureidoisobutyrate c2 c30 STATE_TRANSITION dTDP dTMP c3 c7 STATE_TRANSITION dTDP dTTP c3 c4 STATE_TRANSITION dTMP dTDP c7 c3 STATE_TRANSITION dTTP dTDP c4 c3 STATE_TRANSITION dUMP dUDP c31 c15 STATE_TRANSITION Deoxyuridine dUMP c37 c31 STATE_TRANSITION CTP CDP c24 c23 STATE_TRANSITION Thymidine dTMP c22 c7 STATE_TRANSITION dTMP Thymidine c7 c22 STATE_TRANSITION UMP Uridine c32 c8 STATE_TRANSITION Uridine UMP c8 c32 STATE_TRANSITION P1_space_P4_minus_Bis_space_5_space__minus_uridyl_space__space_tetraphosphate UTP c19 c21 STATE_TRANSITION Uridine Uracil c8 c10 STATE_TRANSITION CDP dCDP c23 c0 c25 c27 STATE_TRANSITION Cytidine Uridine c20 c8 STATE_TRANSITION CMP Cytidine c14 c20 STATE_TRANSITION UDP UMP c36 c32 STATE_TRANSITION CMP CDP c14 c23 STATE_TRANSITION UDP UTP c36 c21 STATE_TRANSITION RNA CDP c17 c23 STATE_TRANSITION UDP UTP c36 c21 STATE_TRANSITION Cytidine CMP c20 c14 STATE_TRANSITION UMP UDP c32 c36 STATE_TRANSITION CDP CMP c23 c14 STATE_TRANSITION UTP UDP c21 c36 STATE_TRANSITION CTP RNA c24 c17 STATE_TRANSITION UTP RNA c21 c17 STATE_TRANSITION dUDP dUTP c15 c16 STATE_TRANSITION CDP CTP c23 c24 STATE_TRANSITION UTP CTP c21 c24 STATE_TRANSITION dCTP DNA c5 c6 STATE_TRANSITION dTTP DNA c4 c6 STATE_TRANSITION _space_5_space_6_minus_Dihydrouracil _space_3_minus_Ureidopropionate c12 c1 STATE_TRANSITION dCMP Deoxycytidine c33 c13 STATE_TRANSITION Uracil Deoxyuridine c10 c37 STATE_TRANSITION dCMP dCDP c33 c25 STATE_TRANSITION Deoxycytidine dCMP c13 c33 STATE_TRANSITION Deoxycytidine Deoxyuridine c13 c37 STATE_TRANSITION dUMP dTMP c31 c7 STATE_TRANSITION _space_S_space__minus_Dihydroorotate Orotate c18 c26 STATE_TRANSITION Oxidized_space_thioredoxin Thioredoxin c29 c34 STATE_TRANSITION UDP dUDP c28 c11 c15 c35 STATE_TRANSITION Uracil Pseudouridine_space_5_space__minus_phosphate c10 c9