2.2 SQUARE inside PROTEIN p0 inside PROTEIN p1 inside PROTEIN p2 inside PROTEIN p3 inside PROTEIN p4 inside PROTEIN p5 inside PROTEIN p6 inside PROTEIN p7 inside PROTEIN p8 inside PROTEIN p9 inside PROTEIN p10 inside PROTEIN p11 inside PROTEIN p12 inside PROTEIN p13 inside PROTEIN p14 inside PROTEIN p15 inside PROTEIN p16 inside PROTEIN p17 inside PROTEIN p18 inside PROTEIN p19 inside PROTEIN p20 inside PROTEIN p21 inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidopropionate inside SIMPLE_MOLECULE Carbamoyl_space_phosphate inside SIMPLE_MOLECULE dTDP inside SIMPLE_MOLECULE dTTP inside SIMPLE_MOLECULE dCTP inside GENE DNA inside SIMPLE_MOLECULE dTMP inside SIMPLE_MOLECULE _beta__minus_Alanine inside SIMPLE_MOLECULE Uridine inside SIMPLE_MOLECULE Pseudouridine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE Uracil inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE Deoxycytidine inside SIMPLE_MOLECULE CMP inside SIMPLE_MOLECULE dUDP inside SIMPLE_MOLECULE dUTP inside RNA RNA inside SIMPLE_MOLECULE _space_S_space__minus_Dihydroorotate inside SIMPLE_MOLECULE Cytidine inside SIMPLE_MOLECULE UTP inside SIMPLE_MOLECULE L_minus_Glutamine inside SIMPLE_MOLECULE Thymidine inside SIMPLE_MOLECULE CDP inside SIMPLE_MOLECULE CTP inside SIMPLE_MOLECULE _space_3_minus_Aminoisobutanoate inside SIMPLE_MOLECULE dCDP inside SIMPLE_MOLECULE Orotate inside SIMPLE_MOLECULE Orotidine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE N_minus_Carbamoyl_minus_L_minus_aspartate inside SIMPLE_MOLECULE _space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE _space_3_minus_Ureidoisobutyrate inside SIMPLE_MOLECULE dUMP inside SIMPLE_MOLECULE UMP inside SIMPLE_MOLECULE dCMP inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP STATE_TRANSITION dCTP dUTP c5 c16 STATE_TRANSITION RNA UDP c17 c40 STATE_TRANSITION dCDP dCTP c26 c5 STATE_TRANSITION dTDP dTTP c3 c4 STATE_TRANSITION dTMP dTDP c7 c3 STATE_TRANSITION _space_3_minus_Ureidopropionate _beta__minus_Alanine c1 c8 STATE_TRANSITION dUMP dUDP c35 c15 STATE_TRANSITION CTP UTP c24 c20 STATE_TRANSITION Thymidine dTMP c22 c7 STATE_TRANSITION dTMP Thymidine c7 c22 STATE_TRANSITION Orotidine_space_5_space__minus_phosphate Orotate c28 c27 c30 STATE_TRANSITION UMP Uridine c36 c9 STATE_TRANSITION Orotidine_space_5_space__minus_phosphate UMP c28 c36 STATE_TRANSITION UMP Uracil c36 c11 STATE_TRANSITION CDP dCDP c23 c0 c26 c31 STATE_TRANSITION CMP Cytidine c14 c19 STATE_TRANSITION CMP CDP c14 c23 STATE_TRANSITION UDP UTP c40 c20 STATE_TRANSITION RNA CDP c17 c23 STATE_TRANSITION UMP UDP c36 c40 STATE_TRANSITION CTP RNA c24 c17 STATE_TRANSITION UTP RNA c20 c17 STATE_TRANSITION dUDP dUTP c15 c16 STATE_TRANSITION CDP CTP c23 c24 STATE_TRANSITION dCTP DNA c5 c6 STATE_TRANSITION UTP CTP c20 c24 STATE_TRANSITION dTTP DNA c4 c6 STATE_TRANSITION L_minus_Glutamine Carbamoyl_space_phosphate c21 c2 STATE_TRANSITION dCMP Deoxycytidine c37 c13 STATE_TRANSITION Carbamoyl_space_phosphate N_minus_Carbamoyl_minus_L_minus_aspartate c2 c29 STATE_TRANSITION dCMP dCDP c37 c26 STATE_TRANSITION dUTP dUMP c16 c35 STATE_TRANSITION dUMP dTMP c35 c7 STATE_TRANSITION _space_S_space__minus_Dihydroorotate Orotate c18 c27 STATE_TRANSITION Oxidized_space_thioredoxin Thioredoxin c33 c38 STATE_TRANSITION UDP dUDP c32 c12 c15 c39 STATE_TRANSITION Uracil Pseudouridine_space_5_space__minus_phosphate c11 c10 STATE_TRANSITION _space_3_minus_Ureidoisobutyrate _space_3_minus_Aminoisobutanoate c34 c25 STATE_TRANSITION _space_S_space__minus_Dihydroorotate N_minus_Carbamoyl_minus_L_minus_aspartate c18 c29