2.2 SQUARE inside PROTEIN p0 inside PROTEIN p1 inside PROTEIN p2 inside PROTEIN p3 inside PROTEIN p4 inside PROTEIN p5 inside PROTEIN p6 inside PROTEIN p7 inside PROTEIN p8 inside PROTEIN p9 inside PROTEIN p10 inside PROTEIN p11 inside PROTEIN p12 inside PROTEIN p13 inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE dTDP inside SIMPLE_MOLECULE dTTP inside SIMPLE_MOLECULE dCTP inside GENE DNA inside SIMPLE_MOLECULE dTMP inside SIMPLE_MOLECULE Uridine inside SIMPLE_MOLECULE Pseudouridine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE Uracil inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE CMP inside SIMPLE_MOLECULE dUDP inside SIMPLE_MOLECULE dUTP inside RNA RNA inside SIMPLE_MOLECULE Cytidine inside SIMPLE_MOLECULE UTP inside SIMPLE_MOLECULE Thymidine inside SIMPLE_MOLECULE CDP inside SIMPLE_MOLECULE CTP inside SIMPLE_MOLECULE dCDP inside SIMPLE_MOLECULE Orotate inside SIMPLE_MOLECULE Orotidine_space_5_space__minus_phosphate inside SIMPLE_MOLECULE _space_5_minus_Phospho_minus__alpha__minus_D_minus_ribose_space_1_minus_diphosphate inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE dUMP inside SIMPLE_MOLECULE UMP inside SIMPLE_MOLECULE dCMP inside SIMPLE_MOLECULE Thioredoxin inside SIMPLE_MOLECULE Oxidized_space_thioredoxin inside SIMPLE_MOLECULE UDP STATE_TRANSITION dCTP dUTP c3 c12 STATE_TRANSITION RNA UDP c13 c31 STATE_TRANSITION dCDP dCTP c19 c3 STATE_TRANSITION dTDP dTTP c1 c2 STATE_TRANSITION CDP CTP c17 c18 STATE_TRANSITION UTP CTP c15 c18 STATE_TRANSITION dCTP DNA c3 c4 STATE_TRANSITION dTMP dTDP c5 c1 STATE_TRANSITION dTTP DNA c2 c4 STATE_TRANSITION dUMP dUDP c26 c11 STATE_TRANSITION CTP UTP c18 c15 STATE_TRANSITION Thymidine dTMP c16 c5 STATE_TRANSITION dCMP dCDP c28 c19 STATE_TRANSITION Orotidine_space_5_space__minus_phosphate Orotate c21 c20 c22 STATE_TRANSITION Uridine UMP c6 c27 STATE_TRANSITION dUTP dUMP c12 c26 STATE_TRANSITION CDP dCDP c17 c0 c19 c23 STATE_TRANSITION Oxidized_space_thioredoxin Thioredoxin c25 c29 STATE_TRANSITION UDP dUDP c24 c9 c11 c30 STATE_TRANSITION CMP CDP c10 c17 STATE_TRANSITION UDP UTP c31 c15 STATE_TRANSITION Uracil Pseudouridine_space_5_space__minus_phosphate c8 c7 STATE_TRANSITION RNA CDP c13 c17 STATE_TRANSITION Cytidine CMP c14 c10 STATE_TRANSITION UMP UDP c27 c31 STATE_TRANSITION CTP RNA c18 c13 STATE_TRANSITION UTP RNA c15 c13 STATE_TRANSITION dUDP dUTP c11 c12