- systems-biology.org - A portal site for Systems Biology
- The Systems Biology Institute
- Kitano Symbiotic Systems Project
- Mizuho Information & Research Institute
- Mitsui Knowledge Industry Co. Ltd.
- Dept. of Biosience and Informatics, Keio University
- SBML ODE Solever
- COPASI
- SABIO-RK
- BioModels.Net - SBML models database
- PANTHER Classification System - Pathways database using CellDesigner Lite
-
Genome Network Platform
- sbml.org - SBML main site
- sbgn.org - Systems Biology Graphical Notation site
- SBW - http://sbw.kgi.edu/
