Utilities
Here is the list of utilites which can use with CellDesignerTM.
CellDesigner Related Utilities
File converter: CellDesigner -> Cytoscapse -> BioPAX v.2.0
| BiNoM (Cytoscape Plugin) |
| Version: |
1.0 |
| Release Date: |
2007 |
| Description: |
Export CellDesigner maps to other formats, with partial support of
CellDesigner semantics. Our Cytoscape plugin BiNoM can convert
CellDesigner files to Cytoscape, and to BioPAX v.2.0 formats. |
| Url: |
http://bioinfo-out.curie.fr/projects/binom/ |
| Developed by: |
Zinovyev A., Viara E., Calzone L., Barillot E. |
| Reference: |
Zinovyev A., Viara E., Calzone L., Barillot E. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. 2007. Bioinformatics doi: 10.1093/bioinformatics/btm553 pdf |
| Work for |
CellDesigner 3.5x |
CellDesigner File viewer +
| BioPP |
| Version: |
1.0 |
| Release Date: |
2007 |
| Description: |
BioPP suite is a web-based application that allows pathway knowledgebases stored in CellDesigner-SBML to be web published with an easily navigated user interface. |
| Url: |
http://tsb.mssm.edu/pathwayPublisher/broadcast/ |
| Developed by: |
Viswanathan GA., Nudelman G., Patil S., Sealfon SC |
| Reference: |
Viswanathan GA., Nudelman G., Patil S., Sealfon SC., BioPP: a tool for web-publication of biological networks, BMC Bioinformatics. 2007 May 22;8:168. |
| Work for |
CellDesigner 4.0 |
| CellPublisher new |
| Version: |
1.0 |
| Release Date: |
2010 |
| Description: |
CellPublisher is a free and open web server to share CellDesigner diagrams with a wide audience. The CellDesigner file is converted into a user-friendly interactive map that lives inside a browser. You can then share it with your collaborators using a URL, or download it to your computer to navigate the interactive diagram locally. |
| Url: |
http://cellpublisher.gobics.de/ |
| Developed by: |
Lope Florez, Christoph Lammers, and Jörg Stülke of the University of Göttingen, Germany. |
| Reference: |
|
| Work for |
CellDesigner 3.5x |
